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Biopolymers|January 23, 2019
Molecular dynamics insights into protein-glycosaminoglycan systems from microsecond-scale simulationsKrzysztof K Bojarski, Adam K Sieradzan, Sergey A SamsonovJournal of Chemical Theory and Computation|May 20, 2014
Revised Backbone-Virtual-Bond-Angle Potentials to Treat the l- and d-Amino Acid Residues in the Coarse-Grained United Residue (UNRES) Force FieldAdam K Sieradzan, Andrei Niadzvedtski, Harold A Scheraga, et al.Journal of Chemical Information and Modeling|March 20, 2026
Parametrization of β3-Peptides for Coarse-Grained Molecular Dynamics SimulationsO Pavela, A Wacha, T Beke-Somfai, et al.Journal of Chemical Theory and Computation|August 16, 2023
Extension of the SUGRES-1P Coarse-Grained Model of Polysaccharides to HeparinAnnemarie Danielsson, Sergey A Samsonov, Adam Liwo, et al.The Journal of Physical Chemistry. B|July 3, 2024
Multilayered Computational Framework for Designing Peptide Inhibitors of HVEM-LIGHT InteractionPiotr Ciura, Pamela Smardz, Marta Spodzieja, et al.Molecules (Basel, Switzerland)|May 11, 2024
Integrating Explicit and Implicit Fullerene Models into UNRES Force Field for Protein Interaction StudiesNatalia H Rogoża, Magdalena A Krupa, Pawel Krupa, et al.Journal of Chemical Theory and Computation|April 15, 2014
Extension of UNRES force field to treat polypeptide chains with D-amino-acid residuesAdam K Sieradzan, Ulrich H E Hansmann, Harold A Scheraga, et al.Journal of Chemical Theory and Computation|February 19, 2015
Physics-based potentials for the coupling between backbone- and side-chain-local conformational states in the UNited RESidue (UNRES) force field for protein simulationsAdam K Sieradzan, Paweł Krupa, Harold A Scheraga, et al.The Journal of Physical Chemistry Letters|October 27, 2023
Toward Consistent Physics-Based Modeling of Local Backbone Structures and Chirality Change of Proteins in Coarse-Grained ApproachesAgnieszka G Lipska, Adam K Sieradzan, Sümeyye Atmaca, et al.Journal of Chemical Theory and Computation|June 9, 2015
Physics-Based Potentials for Coarse-Grained Modeling of Protein-DNA InteractionsYanping Yin, Adam K Sieradzan, Adam Liwo, et al.Pageof 9