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Journal of Molecular Modeling|March 4, 2015
Studies of conformational changes of an arginine-binding protein from Thermotoga maritima in the presence and absence of ligand via molecular dynamics simulations with the coarse-grained UNRES force fieldAgnieszka G Lipska, Adam K Sieradzan, Paweł Krupa, et al.Journal of Molecular Modeling|June 24, 2022
Coarse-grained modeling of the calcium, sodium, magnesium and potassium cations interacting with proteinsAgnieszka G Lipska, Anna M Antoniak, Patryk Wesołowski, et al.The Journal of Chemical Physics|May 16, 2016
Molecular dynamics of protein A and a WW domain with a united-residue model including hydrodynamic interactionAgnieszka G Lipska, Steven R Seidman, Adam K Sieradzan, et al.Biomolecules|September 28, 2021
Theory and Practice of Coarse-Grained Molecular Dynamics of Biologically Important SystemsAdam Liwo, Cezary Czaplewski, Adam K Sieradzan, et al.Biophysical Chemistry|October 20, 2023
Energy landscapes for proteins described by the UNRES coarse-grained potentialPatryk A Wesołowski, Adam K Sieradzan, Michał J Winnicki, et al.Bioorganic Chemistry|November 6, 2025
HVEM-derived peptides as inhibitors of HVEM/LIGHT complex formationPiotr Ciura, Simon Gumpelmair, Emilia Sikorska, et al.Molecules (Basel, Switzerland)|March 28, 2026
Acridinium Chemiluminogenic Labels-Synthesis, Analytical Performance, and Mechanism of Light Generation-A Comparison in View of Biomedical DiagnosticsKarol Krzymiński, Beata Zadykowicz, Justyna Czechowska, et al.Journal of Chemical Theory and Computation|November 26, 2013
Improvement of the treatment of loop structures in the UNRES force field by inclusion of coupling between backbone- and side-chain-local conformational statesPaweł Krupa, Adam K Sieradzan, S Rackovsky, et al.The Journal of Chemical Physics|April 22, 2019
A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. III. Determination of scale-consistent backbone-local and correlation potentials in the UNRES force field and force-field calibration and validationAdam Liwo, Adam K Sieradzan, Agnieszka G Lipska, et al.International Journal of Molecular Sciences|August 23, 2020
Structural Characterization of Covalently Stabilized Human Cystatin C OligomersMagdalena Chrabąszczewska, Adam K Sieradzan, Sylwia Rodziewicz-Motowidło, et al.Pageof 9