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International Journal of Data Mining and Bioinformatics|July 24, 2009
An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate DescentKamal Al-Nasr, Jing HeRobotica|November 16, 2022
Constrained Cyclic Coordinate Descent for Cryo-EM Images at Medium Resolutions: Beyond the Protein Loop Closure ProblemKamal Al Nasr, Jing HeBMC Bioinformatics|February 4, 2010
Structure prediction for the helical skeletons detected from the low resolution protein density mapKamal Al Nasr, Weitao Sun, Jing HeJournal of Bioinformatics and Computational Biology|June 30, 2011
Ranking valid topologies of the secondary structure elements using a constraint graphKamal Al Nasr, Desh Ranjan, Mohammad Zubair, et al.Biopolymers|June 15, 2012
A machine learning approach for the identification of protein secondary structure elements from electron cryo-microscopy density mapsDong Si, Shuiwang Ji, Kamal Al Nasr, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|January 4, 2014
Intensity-based skeletonization of CryoEM gray-scale images using a true segmentation-free algorithmKamal Al Nasr, Chunmei Liu, Mugizi Rwebangira, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|September 11, 2015
Solving the Secondary Structure Matching Problem in Cryo-EM De Novo Modeling Using a Constrained K-Shortest Path Graph AlgorithmKamal Al Nasr, Desh Ranjan, Mohammad Zubair, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|March 24, 2016
An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM ImagesAbhishek Biswas, Desh Ranjan, Mohammad Zubair, et al.BMC Structural Biology|February 26, 2014
Estimating loop length from CryoEM images at medium resolutionsAndrew McKnight, Dong Si, Kamal Al Nasr, et al.Journal of Bioinformatics and Computational Biology|July 20, 2012
Improved efficiency in cryo-EM secondary structure topology determination from inaccurate dataAbhishek Biswas, Dong Si, Kamal Al Nasr, et al.Pageof 365