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Journal of Personalized Medicine|November 27, 2021
Gut Microbiome Profiling Uncovers a Lower Abundance of Butyricicoccus in Advanced Stages of Chronic Kidney DiseaseTessa Gryp, Karoline Faust, Wim Van Biesen, et al.Elife|October 17, 2018
Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut communityKevin D'hoe, Stefan Vet, Karoline Faust, et al.Nature Methods|December 10, 2021
Fast and flexible analysis of linked microbiome data with makoLisa Röttjers, Karoline FaustMethods (San Diego, Calif.)|April 9, 2025
A high-throughput and time-efficient Nanopore full-length 16S rRNA gene sequencing protocol for synthetic microbial communitiesXingjian Zhou, Karoline FaustMsystems|February 20, 2020
manta: a Clustering Algorithm for Weighted Ecological NetworksLisa Röttjers, Karoline FaustFEMS Microbiology Reviews|August 8, 2018
From hairballs to hypotheses-biological insights from microbial networksLisa Röttjers, Karoline FaustNature Reviews. Microbiology|July 1, 2008
Molecular eco-systems biology: towards an understanding of community functionJeroen Raes, Peer BorkMolecular Ecology|March 27, 2015
Soil microbiome responses to the short-term effects of Amazonian deforestationAcacio A Navarrete, Siu M Tsai, Lucas W Mendes, et al.Methods in Molecular Biology (Clifton, N.J.)|December 7, 2011
Predicting metabolic pathways by sub-network extractionKaroline Faust, Jacques van HeldenAnnual Review of Genetics|December 1, 2004
Duplication and divergence: the evolution of new genes and old ideasJohn S Taylor, Jeroen RaesPageof 30