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Proceedings of the National Academy of Sciences of the United States of America|February 16, 2019
Evolution of resilience in protein interactomes across the tree of lifeMarinka Zitnik, Rok Sosič, Marcus W Feldman, et al.IEEE Transactions on Visualization and Computer Graphics|October 12, 2022
Extending the Nested Model for User-Centric XAI: A Design Study on GNN-based Drug RepurposingQianwen Wang, Kexin Huang, Payal Chandak, et al.Biorxiv : the Preprint Server for Biology|November 26, 2025
CONCERT predicts niche-aware perturbation responses in spatial transcriptomicsXiang Lin, Zhenglun Kong, Soumya Ghosh, et al.Nature Machine Intelligence|December 11, 2023
Multimodal learning with graphsYasha Ektefaie, George Dasoulas, Ayush Noori, et al.Journal of Biomedical Informatics|June 5, 2023
Multimodal learning on graphs for disease relation extractionYucong Lin, Keming Lu, Sheng Yu, et al.Advances in Neural Information Processing Systems|April 9, 2020
GNNExplainer: Generating Explanations for Graph Neural NetworksRex Ying, Dylan Bourgeois, Jiaxuan You, et al.Biorxiv : the Preprint Server for Biology|February 3, 2025
Phyla: Towards a foundation model for phylogenetic inferenceAndrew Shen, Yasha Ektefaie, Lavik Jain, et al.Scientific Reports|December 4, 2020
SkipGNN: predicting molecular interactions with skip-graph networksKexin Huang, Cao Xiao, Lucas M Glass, et al.Bioinformatics (Oxford, England)|May 4, 2023
Metapaths: similarity search in heterogeneous knowledge graphs via meta-pathsAyush Noori, Michelle M Li, Amelia L M Tan, et al.Annual Review of Biomedical Data Science|May 15, 2024
Graph Artificial Intelligence in MedicineRuth Johnson, Michelle M Li, Ayush Noori, et al.Pageof 44