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NPJ Systems Biology and Applications|April 5, 2024
Metacell-based differential expression analysis identifies cell type specific temporal gene response programs in COVID-19 patient PBMCsKevin O'Leary, Deyou ZhengBiorxiv : the Preprint Server for Biology|September 15, 2025
shinyUMAP: an online tool for promoting understanding of single cell omics data visualizationRohan Misra, Kevin O'Leary, Wenna Chen, et al.Circulation|September 19, 2025
Fibroblast-Specific Loss of TGF-β Signaling Mediates Lipomatous Metaplasia in the Infarcted HeartIzabela Tuleta, Harikrishnan Venugopal, Kevin O'Leary, et al.Genome Biology|July 5, 2008
Asymmetric histone modifications between the original and derived loci of human segmental duplicationsDeyou ZhengNucleic Acids Research|May 21, 2015
Significant expansion of the REST/NRSF cistrome in human versus mouse embryonic stem cells: potential implications for neural developmentShira Rockowitz, Deyou ZhengMethods in Molecular Biology (Clifton, N.J.)|June 24, 2021
Pseudogene Profiling for Cancer Subtype ClassificationYan Zhang, Deyou ZhengBMC Bioinformatics|December 28, 2018
SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysisDejian Zhao, Deyou ZhengGenome Biology|August 24, 2006
A computational approach for identifying pseudogenes in the ENCODE regionsDeyou Zheng, Mark B GersteinTrends in Genetics : TIG|March 27, 2007
The ambiguous boundary between genes and pseudogenes: the dead rise up, or do they?Deyou Zheng, Mark B GersteinNature Communications|July 2, 2025
Facilitate integrated analysis of single cell multiomic data by binarizing gene expression valuesRohan Misra, Alexander Ferrena, Deyou ZhengPageof 22