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NPJ Systems Biology and Applications|December 27, 2022
Predicting stress response and improved protein overproduction in Bacillus subtilisJuan D Tibocha-Bonilla, Cristal Zuñiga, Asama Lekbua, et al.
Nucleic Acids Research|March 31, 2022
Machine learning from Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulatorsAkanksha Rajput, Hannah Tsunemoto, Anand V Sastry, et al.
Nucleic Acids Research|September 12, 2022
Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosaAkanksha Rajput, Hannah Tsunemoto, Anand V Sastry, et al.
Msphere|March 21, 2022
Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and InfectionReo Yoo, Kevin Rychel, Saugat Poudel, et al.
Nucleic Acids Research|November 18, 2021
proChIPdb: a chromatin immunoprecipitation database for prokaryotic organismsKatherine T Decker, Ye Gao, Kevin Rychel, et al.
Biorxiv : the Preprint Server for Biology|March 3, 2023
Proteome allocation is linked to transcriptional regulation through a modularized transcriptomeArjun Patel, Dominic McGrosso, Ying Hefner, et al.
Nature Communications|June 19, 2024
Proteome allocation is linked to transcriptional regulation through a modularized transcriptomeArjun Patel, Dominic McGrosso, Ying Hefner, et al.
Msystems|November 1, 2022
Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory StructuresYuan Yuan, Yara Seif, Kevin Rychel, et al.
Nucleic Acids Research|September 15, 2023
A multi-scale expression and regulation knowledge base for Escherichia coliCameron R Lamoureux, Katherine T Decker, Anand V Sastry, et al.
Frontiers in Microbiology|November 15, 2021
Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile <i>Sulfolobus acidocaldarius</i>Siddharth M Chauhan, Saugat Poudel, Kevin Rychel, et al.
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