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Msystems|February 7, 2024
Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in <i>Pseudomonas putida</i> KT2440Andrew J Borchert, Alissa C Bleem, Hyun Gyu Lim, et al.
Msystems|August 19, 2024
A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of <i>Streptococcus pyogenes</i>Yujiro Hirose, Daniel C Zielinski, Saugat Poudel, et al.
Genome Biology and Evolution|October 3, 2025
Laboratory Evolution Reveals Transcriptional Mechanisms Underlying Thermal Adaptation of Escherichia coliKevin Rychel, Ke Chen, Edward A Catoiu, et al.
Msystems|January 8, 2024
Independent component analysis reveals 49 independently modulated gene sets within the global transcriptional regulatory architecture of multidrug-resistant <i>Acinetobacter baumannii</i>Nitasha D Menon, Saugat Poudel, Anand V Sastry, et al.
Nucleic Acids Research|November 4, 2024
iModulonDB 2.0: dynamic tools to facilitate knowledge-mining and user-enabled analyses of curated transcriptomic datasetsEdward A Catoiu, Jayanth Krishnan, Gaoyuan Li, et al.
Plos Computational Biology|October 23, 2024
iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendiaAnand V Sastry, Yuan Yuan, Saugat Poudel, et al.
Msystems|June 6, 2023
Elucidation of independently modulated genes in Yujiro Hirose, Saugat Poudel, Anand V Sastry, et al.
Metabolic Engineering|April 30, 2022
Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory networkHyun Gyu Lim, Kevin Rychel, Anand V Sastry, et al.
Cell Reports|September 15, 2023
Laboratory evolution, transcriptomics, and modeling reveal mechanisms of paraquat toleranceKevin Rychel, Justin Tan, Arjun Patel, et al.
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