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BMC Biology|August 13, 2011
Identification of specificity determining residues in peptide recognition domains using an information theoretic approach applied to large-scale binding mapsKevin Y Yip, Lukas Utz, Simon Sitwell, et al.Genome Biology|September 25, 2014
OrthoClust: an orthology-based network framework for clustering data across multiple speciesKoon-Kiu Yan, Daifeng Wang, Joel Rozowsky, et al.Genome Biology|April 17, 2015
An approach for determining and measuring network hierarchy applied to comparing the phosphorylome and the regulomeChao Cheng, Erik Andrews, Koon-Kiu Yan, et al.Bioinformatics (Oxford, England)|February 26, 2011
ACT: aggregation and correlation toolbox for analyses of genome tracksJustin Jee, Joel Rozowsky, Kevin Y Yip, et al.Scientific Reports|December 16, 2016
Integrating Information in Biological Ontologies and Molecular Networks to Infer Novel TermsLe Li, Kevin Y YipCell Systems|April 6, 2016
Cross-Disciplinary Network Comparison: Matchmaking Between HairballsKoon-Kiu Yan, Daifeng Wang, Anurag Sethi, et al.Bioinformatics (Oxford, England)|December 31, 2020
A general near-exact k-mer counting method with low memory consumption enables de novo assembly of 106× human sequence data in 2.7 hoursChristina Huan Shi, Kevin Y YipGenome Research|September 8, 2012
Understanding transcriptional regulation by integrative analysis of transcription factor binding dataChao Cheng, Roger Alexander, Renqiang Min, et al.Bioinformatics (Oxford, England)|January 15, 2011
AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excisionAlexej Abyzov, Mark GersteinBMC Bioinformatics|January 13, 2004
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structuresVadim Alexandrov, Mark GersteinPageof 182