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Biometrics|April 24, 2007
A modified Bayes information criterion with applications to the analysis of comparative genomic hybridization dataNancy R Zhang, David O SiegmundGenome Biology|April 28, 2017
SCALE: modeling allele-specific gene expression by single-cell RNA sequencingYuchao Jiang, Nancy R Zhang, Mingyao LiPlos Computational Biology|February 8, 2011
Estimation of parent specific DNA copy number in tumors using high-density genotyping arraysHao Chen, Haipeng Xing, Nancy R ZhangBriefings in Bioinformatics|February 5, 2017
DNA copy number profiling using single-cell sequencingXuefeng Wang, Hao Chen, Nancy R ZhangBiorxiv : the Preprint Server for Biology|July 10, 2026
Integrating morphology and gene expression of neural cells in unpaired single-cell data using GeoAdvAEJinqiu Turbo Du, Tom Chartrand, Suman Jayadev, et al.Bioinformatics (Oxford, England)|November 26, 2009
Joint estimation of DNA copy number from multiple platformsNancy R Zhang, Yasin Senbabaoglu, Jun Z LiGenome Biology|January 16, 2020
DENDRO: genetic heterogeneity profiling and subclone detection by single-cell RNA sequencingZilu Zhou, Bihui Xu, Andy Minn, et al.Nature Communications|February 2, 2020
Surface protein imputation from single cell transcriptomes by deep neural networksZilu Zhou, Chengzhong Ye, Jingshu Wang, et al.Biorxiv : the Preprint Server for Biology|November 24, 2025
Robust footprinting with sample-specific Tn5 bias correction for bulk and single cell ATAC-seqYuxuan Lin, Hanzhi Wang, Parker C Wilson, et al.Nature Communications|June 9, 2026
Robust footprinting with sample-specific Tn5 bias correction for bulk and single cell ATAC-seqYuxuan Lin, Hanzhi Wang, Parker C Wilson, et al.Pageof 10