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Biophysical Journal|May 28, 2019
Ion Condensation onto Ribozyme Is Site Specific and Fold DependentNaoto Hori, Natalia A Denesyuk, D Thirumalai
Proceedings of the National Academy of Sciences of the United States of America|August 1, 2020
Differences in the free energies between the excited states of Aβ40 and Aβ42 monomers encode their aggregation propensitiesDebayan Chakraborty, John E Straub, D Thirumalai
Physical Review Letters|October 15, 2008
Compression and stretching of a self-avoiding chain in cylindrical nanoporesSuckjoon Jun, D Thirumalai, Bae-Yeun Ha
Current Protein & Peptide Science|April 10, 2009
Allosteric transitions in biological nanomachines are described by robust normal modes of elastic networksWenjun Zheng, Bernard R Brooks, D Thirumalai
Science Advances|July 20, 2022
Differences in ion-RNA binding modes due to charge density variations explain the stability of RNA in monovalent saltsAnja Henning-Knechtel, D Thirumalai, Serdal Kirmizialtin
Journal of Molecular Biology|June 19, 2016
Salt Effects on the Thermodynamics of a Frameshifting RNA Pseudoknot under TensionNaoto Hori, Natalia A Denesyuk, D Thirumalai
Journal of Molecular Biology|November 21, 1997
Folding of RNA involves parallel pathwaysJ Pan, D Thirumalai, S A Woodson
Science Advances|March 22, 2023
Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald's rule of stagesDebayan Chakraborty, John E Straub, D Thirumalai
Current Opinion in Structural Biology|July 5, 2025
Minimal models for RNA simulationsD Thirumalai, Naoto Hori, Hung T Nguyen
Proceedings of the National Academy of Sciences of the United States of America|September 22, 2025
Recent drying of the Ganga River is unprecedented in the last 1,300 yearsDipesh Singh Chuphal, Kaustubh Thirumalai, Vimal Mishra
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