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Genome Biology|April 17, 2015
An approach for determining and measuring network hierarchy applied to comparing the phosphorylome and the regulomeChao Cheng, Erik Andrews, Koon-Kiu Yan, et al.Cell Systems|April 6, 2016
Cross-Disciplinary Network Comparison: Matchmaking Between HairballsKoon-Kiu Yan, Daifeng Wang, Anurag Sethi, et al.Genome Biology|February 18, 2011
A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasetsChao Cheng, Koon-Kiu Yan, Kevin Y Yip, et al.BMC Bioinformatics|October 16, 2020
Latent-space embedding of expression data identifies gene signatures from sputum samples of asthmatic patientsShaoke Lou, Tianxiao Li, Daniel Spakowicz, et al.BMC Bioinformatics|July 4, 2020
DiNeR: a Differential graphical model for analysis of co-regulation Network RewiringJing Zhang, Jason Liu, Donghoon Lee, et al.Bioinformatics (Oxford, England)|July 14, 2020
TopicNet: a framework for measuring transcriptional regulatory network changeShaoke Lou, Tianxiao Li, Xiangmeng Kong, et al.Plos Computational Biology|July 6, 2023
Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbesShaoke Lou, Mingjun Yang, Tianxiao Li, et al.Physical Review Letters|May 14, 2009
Fluctuations in mass-action equilibrium of protein binding networksKoon-Kiu Yan, Dylan Walker, Sergei MaslovBiology Direct|November 28, 2007
Parameters of proteome evolution from histograms of amino-acid sequence identities of paralogous proteinsJacob Bock Axelsen, Koon-Kiu Yan, Sergei MaslovProceedings of the National Academy of Sciences of the United States of America|March 31, 2010
Analysis of diverse regulatory networks in a hierarchical context shows consistent tendencies for collaboration in the middle levelsNitin Bhardwaj, Koon-Kiu Yan, Mark B GersteinPageof 45