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Plos Computational Biology|April 18, 2015
Loregic: a method to characterize the cooperative logic of regulatory factorsDaifeng Wang, Koon-Kiu Yan, Cristina Sisu, et al.
Bioinformatics (Oxford, England)|January 15, 2011
AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excisionAlexej Abyzov, Mark Gerstein
BMC Bioinformatics|January 13, 2004
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structuresVadim Alexandrov, Mark Gerstein
Proteins|March 30, 2004
A method using active-site sequence conservation to find functional shifts in protein families: application to the enzymes of central metabolism, leading to the identification of an anomalous isocitrate dehydrogenase in pathogensRajdeep Das, Mark Gerstein
Current Opinion in Microbiology|September 29, 2004
Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network predictionRonald Jansen, Mark Gerstein
Bioinformatics (Oxford, England)|July 25, 2024
Representing core gene expression activity relationships using the latent structure implicit in Bayesian networksJiahao Gao, Mark Gerstein
Current Opinion in Chemical Biology|March 24, 2004
Exploring the range of protein flexibility, from a structural proteomics perspectiveMark Gerstein, Nathaniel Echols
Gene|August 12, 2003
The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouseZhaolei Zhang, Mark Gerstein
Bioinformatics (Oxford, England)|July 16, 2002
Calculations of protein volumes: sensitivity analysis and parameter databaseJerry Tsai, Mark Gerstein
Proceedings of the National Academy of Sciences of the United States of America|September 28, 2006
Genomic analysis of the hierarchical structure of regulatory networksHaiyuan Yu, Mark Gerstein
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