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Genome Informatics. Workshop on Genome Informatics|January 1, 1997
Beyond Mutation Matrices: Physical-Chemistry Based Evolutionary ModelsKoshi, Mindell, Goldstein
Molecular Biology and Evolution|February 24, 1999
Using physical-chemistry-based substitution models in phylogenetic analyses of HIV-1 subtypesJ M Koshi, D P Mindell, R A Goldstein
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|January 1, 1996
Correlating structure-dependent mutation matrices with physical-chemical propertiesJ M Koshi, R A Goldstein
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|March 27, 2001
Analyzing site heterogeneity during protein evolutionJ M Koshi, R A Goldstein
Protein Engineering|July 1, 1995
Context-dependent optimal substitution matricesJ M Koshi, R A Goldstein
Journal of Molecular Evolution|February 1, 1996
Probabilistic reconstruction of ancestral protein sequencesJ M Koshi, R A Goldstein
Proteins|August 26, 1998
Models of natural mutations including site heterogeneityJ M Koshi, R A Goldstein
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|July 21, 2000
Modeling evolution at the protein level using an adjustable amino acid fitness modelM W Dimmic, D P Mindell, R A Goldstein
Journal of Molecular Evolution|August 8, 2002
rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogenyMatthew W Dimmic, Joshua S Rest, David P Mindell, et al.
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