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Nucleic Acids Research|August 16, 2024
Improved sub-genomic RNA prediction with the ARTIC protocolThomas Baudeau, Kristoffer SahlinGenome Research|May 22, 2023
Entropy predicts sensitivity of pseudorandom seedsBenjamin Dominik Maier, Kristoffer SahlinBioinformatics (Oxford, England)|April 23, 2025
De novo clustering of large long-read transcriptome datasets with isONclust3Alexander J Petri, Kristoffer SahlinBioinformatics (Oxford, England)|June 30, 2023
isONform: reference-free transcriptome reconstruction from Oxford Nanopore dataAlexander J Petri, Kristoffer SahlinJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|September 30, 2016
Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces BiasKristoffer Sahlin, Mattias Frånberg, Lars ArvestadBioinformatics (Oxford, England)|May 7, 2016
Assembly scaffolding with PE-contaminated mate-pair librariesKristoffer Sahlin, Rayan Chikhi, Lars ArvestadEcology and Evolution|February 18, 2021
NGSpeciesID: DNA barcode and amplicon consensus generation from long-read sequencing dataKristoffer Sahlin, Marisa C W Lim, Stefan ProstBioinformatics (Oxford, England)|August 28, 2012
Improved gap size estimation for scaffolding algorithmsKristoffer Sahlin, Nathaniel Street, Joakim Lundeberg, et al.Genome Biology|June 1, 2023
A survey of mapping algorithms in the long-reads eraKristoffer Sahlin, Thomas Baudeau, Bastien Cazaux, et al.Genome Biology|March 1, 2026
Multi-context seeds enable fast and high-accuracy read mappingIvan Tolstoganov, Marcel Martin, Nicolas Buchin, et al.Pageof 10