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Bioinformatics (Oxford, England)|July 2, 2013
Using state machines to model the Ion Torrent sequencing process and to improve read error ratesDavid Golan, Paul MedvedevGenome Research|July 27, 2022
Assembler artifacts include misassembly because of unsafe unitigs and underassembly because of bidirected graphsAmatur Rahman, Paul MedvedevAlgorithms for Molecular Biology : AMB|May 4, 2024
ESKEMAP: exact sketch-based read mappingTizian Schulz, Paul MedvedevLipics : Leibniz International Proceedings in Informatics|April 29, 2025
PLA-index: A k-mer Index Exploiting Rank Curve LinearityHasin Abrar, Paul MedvedevNature Communications|December 11, 2020
Scalable multiple whole-genome alignment and locally collinear block construction with SibeliaZIlia Minkin, Paul MedvedevIscience|June 21, 2020
Scalable Pairwise Whole-Genome Homology Mapping of Long Genomes with BubbZIlia Minkin, Paul MedvedevBioinformatics (Oxford, England)|July 23, 2018
Toward fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnosticsChen Sun, Paul MedvedevBioinformatics (Oxford, England)|June 5, 2013
Informed and automated k-mer size selection for genome assemblyRayan Chikhi, Paul MedvedevBioinformatics (Oxford, England)|July 7, 2026
The gift of novelty: repeat-robust k-mer-based estimators of mutation ratesHaonan Wu, Paul MedvedevComputational and Structural Biotechnology Journal|August 3, 2023
Nanopore sequencing of PCR products enables multicopy gene family reconstructionAlice Namias, Kristoffer Sahlin, Patrick Makoundou, et al.Pageof 10