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Bioinformatics (Oxford, England)|September 11, 2019
Improved representation of sequence bloom treesRobert S Harris, Paul MedvedevJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|October 18, 2016
Safe and Complete Contig Assembly Through OmnitigsAlexandru I Tomescu, Paul MedvedevIEEE/ACM Transactions on Computational Biology and Bioinformatics|November 30, 2021
Safety in Multi-Assembly via Paths Appearing in All Path Covers of a DAGManuel Caceres, Brendan Mumey, Edin Husic, et al.Iscience|November 7, 2022
Mapping-friendly sequence reductions: Going beyond homopolymer compressionLuc Blassel, Paul Medvedev, Rayan ChikhiAlgorithms for Molecular Biology : AMB|June 22, 2021
Disk compression of k-mer setsAmatur Rahman, Rayan Chikhi, Paul MedvedevAlgorithms for Molecular Biology : AMB|July 4, 2026
A k-mer-based estimator of the substitution rate between repetitive sequencesHaonan Wu, Antonio Blanca, Paul MedvedevBioinformatics (Oxford, England)|June 27, 2022
Markov chains improve the significance computation of overlapping genome annotationsAskar Gafurov, Broňa Brejová, Paul MedvedevACM Computing Surveys|March 9, 2026
Data Structures to Represent a Set of k -long DNA SequencesRayan Chikhi, Jan Holub, Paul MedvedevLipics : Leibniz International Proceedings in Informatics|May 7, 2024
Compression Algorithm for Colored de Bruijn GraphsAmatur Rahman, Yoann Dufresne, Paul MedvedevAlgorithms in Bioinformatics : ... International Workshop, WABI ..., Proceedings. WABI (Workshop)|April 20, 2026
A k-mer-Based Estimator of the Substitution Rate Between Repetitive SequencesHaonan Wu, Antonio Blanca, Paul MedvedevPageof 10