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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|September 30, 2010
Rearrangement models and single-cut operationsAnne Bergeron, Paul Medvedev, Jens StoyeBioinformatics (Oxford, England)|June 17, 2016
Compacting de Bruijn graphs from sequencing data quickly and in low memoryRayan Chikhi, Antoine Limasset, Paul MedvedevBiorxiv : the Preprint Server for Biology|July 16, 2025
A k-mer-based estimator of the substitution rate between repetitive sequencesHaonan Wu, Antonio Blanca, Paul MedvedevAlgorithms for Molecular Biology : AMB|May 26, 2024
Compression algorithm for colored de Bruijn graphsAmatur Rahman, Yoann Dufresne, Paul MedvedevNature Methods|October 22, 2009
Computational methods for discovering structural variation with next-generation sequencingPaul Medvedev, Monica Stanciu, Michael BrudnoBioinformatics (Oxford, England)|September 24, 2016
TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomesIlia Minkin, Son Pham, Paul MedvedevTrends in Genetics : TIG|February 26, 2017
Y and W Chromosome Assemblies: Approaches and DiscoveriesMarta Tomaszkiewicz, Paul Medvedev, Kateryna D MakovaBiorxiv : the Preprint Server for Biology|August 12, 2025
Efficiency of Learned Indexes on Genome SpectraMd Hasin Abrar, Paul Medvedev, Giorgio VinciguerraLipics : Leibniz International Proceedings in Informatics|April 15, 2026
Efficiency of Learned Indexes on Genome SpectraMd Hasin Abrar, Paul Medvedev, Giorgio VinciguerraBioinformatics Advances|January 26, 2023
kmtricks: efficient and flexible construction of Bloom filters for large sequencing data collectionsTéo Lemane, Paul Medvedev, Rayan Chikhi, et al.Pageof 10