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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 2, 2022
The Statistics of k-mers from a Sequence Undergoing a Simple Mutation Process Without Spurious MatchesAntonio Blanca, Robert S Harris, David Koslicki, et al.Lipics : Leibniz International Proceedings in Informatics|April 29, 2025
Applying the Safe-And-Complete Framework to Practical Genome AssemblySebastian Schmidt, Santeri Toivonen, Paul Medvedev, et al.Nucleic Acids Research|May 10, 2013
Reprever: resolving low-copy duplicated sequences using template driven assemblySangwoo Kim, Paul Medvedev, Tara A Paton, et al.Algorithms in Bioinformatics : ... International Workshop, WABI ..., Proceedings. WABI (Workshop)|April 23, 2026
Estimation of substitution and indel rates via k-mer statisticsMahmudur Rahman Hera, Paul Medvedev, David Koslicki, et al.Genome Research|May 4, 2026
Hash functions in nucleotide sequence analysisKe Chen, Xiang Li, Qian Shi, et al.Bioinformatics (Oxford, England)|April 5, 2024
Designing efficient randstrobes for sequence similarity analysesMoein Karami, Aryan Soltani Mohammadi, Marcel Martin, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|October 18, 2011
Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblersPaul Medvedev, Son Pham, Mark Chaisson, et al.Genome Research|September 1, 2010
Detecting copy number variation with mated short readsPaul Medvedev, Marc Fiume, Misko Dzamba, et al.Nature Protocols|April 12, 2022
Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipmentAaron Pomerantz, Kristoffer Sahlin, Nina Vasiljevic, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 29, 2015
On the representation of de Bruijn graphsRayan Chikhi, Antoine Limasset, Shaun Jackman, et al.Pageof 10