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Molecular Systems Biology|November 19, 2009
Strategies for cellular decision-makingTheodore J Perkins, Peter S SwainJournal of Theoretical Biology|October 7, 2023
A Markov constraint to uniquely identify elementary flux mode weights in unimolecular metabolic networksJustin G Chitpin, Theodore J PerkinsCell Reports Methods|May 22, 2026
Atomic elementary flux modes explain the steady state flow of metabolites in large-scale flux networksJustin G Chitpin, Theodore J PerkinsMedicina (Kaunas, Lithuania)|February 27, 2026
Pregnancy AI: Development and Internal Validation of an Artificial Intelligence Tool to Predict Live Births in ICSI and IVF Cycles Using Clinical Features and Embryo ImagesJaume Minano Masip, Penelope Borduas, Isaac-Jacques Kadoch, et al.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|October 25, 2017
APEX_SCOPE: A graphical user interface for visualization of multi-modal data in inter-disciplinary studiesLara J Kanbar, Wissam Shalish, Doina Precup, et al.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|March 9, 2017
Automated ongoing data validation and quality control of multi-institutional studiesLara J Kanbar, Wissam Shalish, Doina Precup, et al.Journal of Theoretical Biology|August 11, 2004
Inferring models of gene expression dynamicsTheodore J Perkins, Mike Hallett, Leon GlassBMC Bioinformatics|February 16, 2021
WACS: improving ChIP-seq peak calling by optimally weighting controlsAseel Awdeh, Marcel Turcotte, Theodore J PerkinsBio Systems|January 3, 2006
Dynamical properties of model gene networks and implications for the inverse problemTheodore J Perkins, Mike Hallett, Leon GlassInterface Focus|August 27, 2025
Genetic network structure and dynamics: identifying simple negative feedback loopsTheodore J Perkins, Roderick Edwards, Leon GlassPageof 12