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Philosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences|October 6, 2010
Robust dynamics in minimal hybrid models of genetic networksTheodore J Perkins, Roy Wilds, Leon GlassJournal of the Royal Society, Interface|September 15, 2012
What do molecules do when we are not looking? State sequence analysis for stochastic chemical systemsPavel Levin, Jérémie Lefebvre, Theodore J PerkinsBMC Genomics|October 14, 2024
Identifying transcription factors with cell-type specific DNA binding signaturesAseel Awdeh, Marcel Turcotte, Theodore J PerkinsNeural Networks : the Official Journal of the International Neural Network Society|May 15, 2022
Deep learning, reinforcement learning, and world modelsYutaka Matsuo, Yann LeCun, Maneesh Sahani, et al.Journal of Personalized Medicine|July 25, 2025
An Artificial Intelligence-Based Model to Predict Pregnancy After Intrauterine Insemination: A Retrospective Analysis of 9501 CyclesJaume Minano Masip, Camille Grysole, Penelope Borduas, et al.Plos One|August 18, 2017
Uncovering robust patterns of microRNA co-expression across cancers using Bayesian Relevance NetworksParameswaran Ramachandran, Daniel Sánchez-Taltavull, Theodore J PerkinsEpigenetics & Chromatin|September 22, 2015
BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlatesParameswaran Ramachandran, Gareth A Palidwor, Theodore J PerkinsBioinformatics (Oxford, England)|April 8, 2015
Gene selection for the reconstruction of stem cell differentiation trees: a linear programming approachMohamed A Ghadie, Nathalie Japkowicz, Theodore J PerkinsBioinformatics (Oxford, England)|September 3, 2016
On cross-conditional and fluctuation correlations in competitive RNA networksDaniel Sánchez-Taltavull, Matthew MacLeod, Theodore J PerkinsProceedings of the National Academy of Sciences of the United States of America|April 11, 2007
Noisy information processing through transcriptional regulationEric Libby, Theodore J Perkins, Peter S SwainPageof 12