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Annual Review of Microbiology|September 7, 2001
Horizontal gene transfer in prokaryotes: quantification and classificationE V Koonin, K S Makarova, L AravindGenetics|May 3, 2001
Saccharomyces cerevisiae SMT4 encodes an evolutionarily conserved protease with a role in chromosome condensation regulationA V Strunnikov, L Aravind, E V KooninCurrent Opinion in Structural Biology|May 9, 2006
Comparative genomics and structural biology of the molecular innovations of eukaryotesL Aravind, Lakshminarayan M Iyer, Eugene V KooninNucleic Acids Research|September 2, 1998
Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteinsL Aravind, D D Leipe, E V KooninNucleic Acids Research|September 13, 2000
SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectoriesL Aravind, K S Makarova, E V KooninProtein Science : a Publication of the Protein Society|August 19, 1999
A superfamily of archaeal, bacterial, and eukaryotic proteins homologous to animal transglutaminasesK S Makarova, L Aravind, E V KooninJournal of Molecular Biology|September 24, 2004
STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transferDetlef D Leipe, Eugene V Koonin, L AravindJournal of Molecular Biology|March 15, 2006
Evolutionary dynamics of prokaryotic transcriptional regulatory networksM Madan Babu, Sarah A Teichmann, L AravindNucleic Acids Research|February 12, 1999
Conserved domains in DNA repair proteins and evolution of repair systemsL Aravind, D R Walker, E V KooninGenome Biology|July 25, 2006
The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domainsLakshminarayan M Iyer, A Maxwell Burroughs, L AravindPageof 65