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IEEE/ACM Transactions on Computational Biology and Bioinformatics|September 10, 2024
An Automated Convergence Diagnostic for Phylogenetic MCMC AnalysesLars Berling, Remco Bouckaert, Alex GavryushkinPlos Computational Biology|February 12, 2025
Accurate Bayesian phylogenetic point estimation using a tree distribution parameterized by clade probabilitiesLars Berling, Jonathan Klawitter, Remco Bouckaert, et al.Bioinformatics (Oxford, England)|August 23, 2024
Estimating the mean in the space of ranked phylogenetic treesLars Berling, Lena Collienne, Alex GavryushkinPeerj|September 22, 2016
Phylogeography by diffusion on a sphere: whole world phylogeographyRemco BouckaertCommunications Biology|July 28, 2022
Quantitatively defining species boundaries with more efficiency and more biological realismJordan Douglas, Remco BouckaertJournal of Mathematical Biology|January 25, 2021
Computing nearest neighbour interchange distances between ranked phylogenetic treesLena Collienne, Alex GavryushkinBiorxiv : the Preprint Server for Biology|September 16, 2024
An independent base composition of each rate class for improved likelihood-based phylogeny estimation; the 5rf modelPeter J Waddell, Remco BouckaertJournal of Theoretical Biology|May 19, 2016
The space of ultrametric phylogenetic treesAlex Gavryushkin, Alexei J DrummondPlos Computational Biology|February 2, 2021
Adaptive dating and fast proposals: Revisiting the phylogenetic relaxed clock modelJordan Douglas, Rong Zhang, Remco BouckaertJournal of Mathematical Biology|July 31, 2017
The combinatorics of discrete time-trees: theory and open problemsAlex Gavryushkin, Chris Whidden, Frederick A MatsenPageof 6