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Bioinformatics (Oxford, England)|October 11, 2018
TEPIC 2-an extended framework for transcription factor binding prediction and integrative epigenomic analysisFlorian Schmidt, Fabian Kern, Peter Ebert, et al.
Algorithms for Molecular Biology : AMB|May 15, 2026
Probing transcription factor subsets in gene regulatory networksLukas Geis, Dennis Hecker, Martin Hoefer, et al.
Bioinformatics (Oxford, England)|June 30, 2009
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short readsKai Ye, Marcel H Schulz, Quan Long, et al.
Computational and Structural Biotechnology Journal|December 13, 2023
Multimodal analysis methods in predictive biomedicineArber Qoku, Nikoletta Katsaouni, Nadine Flinner, et al.
Gigascience|January 27, 2022
Comparative analysis of common alignment tools for single-cell RNA sequencingRalf Schulze Brüning, Lukas Tombor, Marcel H Schulz, et al.
Plos One|April 15, 2021
CpG content-dependent associations between transcription factors and histone modificationsJonas Fischer, Fatemeh Behjati Ardakani, Kathrin Kattler, et al.
Trends in Genetics : TIG|January 25, 2025
Revealing microRNA regulation in single cellsRanjan K Maji, Matthias S Leisegang, Reinier A Boon, et al.
Bioinformatics (Oxford, England)|January 28, 2023
The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell dataDennis Hecker, Fatemeh Behjati Ardakani, Alexander Karollus, et al.
Nucleic Acids Research|March 24, 2022
Nuclear receptor activation shapes spatial genome organization essential for gene expression control: lessons learned from the vitamin D receptorTimothy Warwick, Marcel H Schulz, Ralf Gilsbach, et al.
Bioinformatics (Oxford, England)|November 14, 2018
An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasetsFlorian Schmidt, Markus List, Engin Cukuroglu, et al.
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