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Journal of Chemical Information and Modeling|March 30, 2023
Benchmarking the Drude Polarizable Force Field Using the r(GACC) TetranucleotideLauren Winkler, Thomas E CheathamJournal of Chemical Theory and Computation|December 29, 2023
van der Waals Parameter Scanning with Amber Nucleic Acid Force Fields: Revisiting Means to Better Capture the RNA/DNA Structure through MDOlivia Love, Lauren Winkler, Thomas E CheathamJournal of Chemical Theory and Computation|November 28, 2023
Assessment of A- to B- DNA Transitions Utilizing the Drude Polarizable Force FieldLauren Winkler, Rodrigo Galindo-Murillo, Thomas E CheathamJournal of Chemical Theory and Computation|March 28, 2023
Structures and Dynamics of DNA Mini-Dumbbells Are Force Field DependentLauren Winkler, Rodrigo Galindo-Murillo, Thomas E CheathamBiochemistry|February 1, 2022
Riboflavin Stabilizes Abasic, Oxidized G-Quadruplex StructuresRodrigo Galindo-Murillo, Lauren Winkler, Jingwei Ma, et al.The Journal of Physical Chemistry. B|December 15, 2020
Ancillary Ligand in Ternary CuII Complexes Guides Binding Selectivity toward Minor-Groove DNARodrigo Galindo-Murillo, Lauren Winkler, Juan Carlos García-Ramos, et al.Current Opinion in Structural Biology|June 15, 2004
Simulation and modeling of nucleic acid structure, dynamics and interactionsThomas E CheathamBiophysical Journal|July 4, 2017
Mg2+ Binding Promotes SLV as a Scaffold in Varkud Satellite Ribozyme SLI-SLV Kissing Loop JunctionChristina Bergonzo, Thomas E CheathamJournal of Chemical Theory and Computation|November 18, 2015
Improved Force Field Parameters Lead to a Better Description of RNA StructureChristina Bergonzo, Thomas E CheathamBiopolymers|June 21, 2013
Twenty-five years of nucleic acid simulationsThomas E Cheatham, David A CasePageof 13