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Cell Host & Microbe|July 10, 2020
Co-evolution and Co-speciation of Host-Gut Bacteria SystemsMathieu Groussin, Florent Mazel, Eric J AlmNature Communications|April 20, 2018
Random sequences rapidly evolve into de novo promotersAvihu H Yona, Eric J Alm, Jeff GoreBioinformatics (Oxford, England)|June 13, 2012
Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and lossMukul S Bansal, Eric J Alm, Manolis KellisStatistical Methods in Medical Research|February 10, 2017
Designing fecal microbiota transplant trials that account for differences in donor stool efficacyScott W Olesen, Thomas Gurry, Eric J AlmPlos One|May 5, 2017
dbOTU3: A new implementation of distribution-based OTU callingScott W Olesen, Claire Duvallet, Eric J AlmPlos Computational Biology|April 24, 2018
Correcting for batch effects in case-control microbiome studiesSean M Gibbons, Claire Duvallet, Eric J AlmThe ISME Journal|February 28, 2019
Interactions in self-assembled microbial communities saturate with diversityXiaoqian Yu, Martin F Polz, Eric J AlmJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|September 17, 2013
Reconciliation revisited: handling multiple optima when reconciling with duplication, transfer, and lossMukul S Bansal, Eric J Alm, Manolis KellisPlos One|January 26, 2013
Sympatric speciation: when is it possible in bacteria?Jonathan Friedman, Eric J Alm, B Jesse ShapiroGenome Biology|January 23, 2025
X-Mapper: fast and accurate sequence alignment via gapped x-mersJeffry M Gaston, Eric J Alm, An-Ni ZhangPageof 21