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BMC Bioinformatics|January 25, 2008
Universal seeds for cDNA-to-genome comparisonLeming Zhou, Jonathan Stanton, Liliana FloreaJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 26, 2007
Designing sensitive and specific spaced seeds for cross-species mRNA-to-genome alignmentLeming Zhou, Liliana FloreaBioinformatics (Oxford, England)|October 23, 2008
Effective cluster-based seed design for cross-species sequence comparisonsLeming Zhou, Ingrid Mihai, Liliana FloreaNucleic Acids Research|May 12, 2009
Sim4cc: a cross-species spliced alignment programLeming Zhou, Mihaela Pertea, Arthur L Delcher, et al.Briefings in Bioinformatics|June 10, 2006
Bioinformatics of alternative splicing and its regulationLiliana FloreaGigascience|October 27, 2015
Rcorrector: efficient and accurate error correction for Illumina RNA-seq readsLi Song, Liliana FloreaBMC Bioinformatics|June 6, 2013
CLASS: constrained transcript assembly of RNA-seq readsLi Song, Liliana FloreaBioinformatics (Oxford, England)|May 10, 2011
Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexingBrian Walenz, Liliana FloreaBiorxiv : the Preprint Server for Biology|May 13, 2026
Benchmarking foundation models for splice site and exon annotationZitong He, Liliana FloreaGenome Biology|September 14, 2022
Comprehensive and scalable quantification of splicing differences with MntJULiPGuangyu Yang, Sarven Sabunciyan, Liliana FloreaPageof 11