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Plos One|April 30, 2020
SMART-Q:  An Integrative Pipeline Quantifying Cell Type-Specific RNA TranscriptionXiaoyu Yang, Seth Bergenholtz, Lenka Maliskova, et al.
Elife|May 25, 2019
Live-cell imaging reveals enhancer-dependent <i>Sox2</i> transcription in the absence of enhancer proximityJeffrey M Alexander, Juan Guan, Bingkun Li, et al.
Science (New York, N.Y.)|December 15, 2018
CRISPR-mediated activation of a promoter or enhancer rescues obesity caused by haploinsufficiencyNavneet Matharu, Sawitree Rattanasopha, Serena Tamura, et al.
Genome Research|January 28, 2016
A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screeningYarui Diao, Bin Li, Zhipeng Meng, et al.
Elife|June 18, 2017
SOX2 regulates acinar cell development in the salivary glandElaine Emmerson, Alison J May, Sara Nathan, et al.
Biorxiv : the Preprint Server for Biology|October 17, 2024
CRISPR tiling deletion screens reveal functional enhancers of neuropsychiatric risk genes and allelic compensation effects (ACE) on transcriptionXingjie Ren, Lina Zheng, Lenka Maliskova, et al.
Biorxiv : the Preprint Server for Biology|December 11, 2023
Cell-Specific Transposable Element Gene Expression Analysis Identifies Associations with Systemic Lupus Erythematosus PhenotypesZachary Cutts, Sarah Patterson, Lenka Maliskova, et al.
Nature Communications|March 26, 2026
CRISPR tiling deletion screens reveal functional enhancers and allelic compensation effects (ACE) on SIN3A transcriptionXingjie Ren, Lina Zheng, Yuxi Liu, et al.
ACR Open Rheumatology|August 14, 2024
Cell-Specific Transposable Element and Gene Expression Analysis Across Systemic Lupus Erythematosus PhenotypesZachary Cutts, Sarah Patterson, Lenka Maliskova, et al.
Communications Biology|April 22, 2021
Transcriptomic analysis of immune cells in a multi-ethnic cohort of systemic lupus erythematosus patients identifies ethnicity- and disease-specific expression signaturesGaia Andreoletti, Cristina M Lanata, Laura Trupin, et al.
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