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Bioinformatics (Oxford, England)|September 6, 2005
A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusteringsAurora Torrente, Misha Kapushesky, Alvis BrazmaBioinformatics (Oxford, England)|January 15, 2011
A pipeline for RNA-seq data processing and quality assessmentAngela Goncalves, Andrew Tikhonov, Alvis Brazma, et al.Bioinformatics (Oxford, England)|December 27, 2005
ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expressionJonathon Blake, Christian Schwager, Misha Kapushesky, et al.Methods in Enzymology|August 31, 2006
Data storage and analysis in ArrayExpressAlvis Brazma, Misha Kapushesky, Helen Parkinson, et al.Bioinformatics (Oxford, England)|June 24, 2011
ontoCAT: an R package for ontology traversal and searchNatalja Kurbatova, Tomasz Adamusiak, Pavel Kurnosov, et al.Current Protocols in Bioinformatics|September 27, 2008
Data storage and analysis in ArrayExpress and Expression ProfilerGabriella Rustici, Misha Kapushesky, Nikolay Kolesnikov, et al.Bioinformatics (Oxford, England)|June 10, 2009
Importing ArrayExpress datasets into R/BioconductorAudrey Kauffmann, Tim F Rayner, Helen Parkinson, et al.Bioinformatics (Oxford, England)|March 5, 2010
Modeling sample variables with an Experimental Factor OntologyJames Malone, Ele Holloway, Tomasz Adamusiak, et al.Nucleic Acids Research|November 13, 2009
Gene expression atlas at the European bioinformatics instituteMisha Kapushesky, Ibrahim Emam, Ele Holloway, et al.Pageof 3