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Journal of Chemical Theory and Computation|November 25, 2015
Improving the Efficiency of Protein-Ligand Binding Free-Energy Calculations by System TruncationSamuel Genheden, Ulf RydeJournal of Chemical Theory and Computation|November 26, 2015
Comparison of Methods to Obtain Force-Field Parameters for Metal SitesLiHong Hu, Ulf RydePhysical Chemistry Chemical Physics : PCCP|July 17, 2012
Convergence of QM/MM free-energy perturbations based on molecular-mechanics or semiempirical simulationsJimmy Heimdal, Ulf RydeJournal of Inorganic Biochemistry|July 18, 2002
Theoretical study of the discrimination between O(2) and CO by myoglobinEmma Sigfridsson, Ulf RydeJournal of Inorganic Biochemistry|May 12, 2004
The structure of sitting-atop complexes of metalloporphyrins studied by theoretical methodsYong Shen, Ulf RydeJournal of Biological Inorganic Chemistry : JBIC : a Publication of the Society of Biological Inorganic Chemistry|April 2, 2013
How are hydrogen bonds modified by metal binding?Charlotte Husberg, Ulf RydeThe Journal of Physical Chemistry. A|December 20, 2008
How accurate can a force field become? A polarizable multipole model combined with fragment-wise quantum-mechanical calculationsPär Söderhjelm, Ulf RydeJournal of Computer-Aided Molecular Design|March 15, 2018
Assessing the stability of free-energy perturbation calculations by performing variations in the methodFrancesco Manzoni, Ulf RydeJournal of Biological Inorganic Chemistry : JBIC : a Publication of the Society of Biological Inorganic Chemistry|March 5, 2016
Protonation states of intermediates in the reaction mechanism of [NiFe] hydrogenase studied by computational methodsGeng Dong, Ulf RydeJournal of Biological Inorganic Chemistry : JBIC : a Publication of the Society of Biological Inorganic Chemistry|September 3, 2018
Reaction mechanism of formate dehydrogenase studied by computational methodsGeng Dong, Ulf RydePageof 56