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Expert Opinion on Drug Discovery|April 4, 2015
The MM/PBSA and MM/GBSA methods to estimate ligand-binding affinitiesSamuel Genheden, Ulf Ryde
Journal of Chemical Theory and Computation|July 24, 2025
Reproducibility of QM/MM Calculations for the SARS-CoV-2 Main ProteaseXiaoli Sun, Ulf Ryde
Chemistry (Weinheim an Der Bergstrasse, Germany)|January 10, 2022
Thermodynamically Favourable States in the Reaction of Nitrogenase without Dissociation of any Sulfide LigandHao Jiang, Ulf Ryde
Journal of Computer-Aided Molecular Design|September 11, 2008
An improved method to predict the entropy term with the MM/PBSA approachJacob Kongsted, Ulf Ryde
Journal of Computational Chemistry|July 15, 2009
How to obtain statistically converged MM/GBSA resultsSamuel Genheden, Ulf Ryde
Physical Chemistry Chemical Physics : PCCP|May 23, 2012
Will molecular dynamics simulations of proteins ever reach equilibrium?Samuel Genheden, Ulf Ryde
Journal of Inorganic Biochemistry|September 1, 2004
Protonation status of metal-bound ligands can be determined by quantum refinementKristina Nilsson, Ulf Ryde
Journal of Chemical Theory and Computation|November 25, 2015
Comparison of the Efficiency of the LIE and MM/GBSA Methods to Calculate Ligand-Binding EnergiesSamuel Genheden, Ulf Ryde
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