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Nucleic Acids Research|April 20, 2019
GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structureGyu Rie Lee, Jonghun Won, Lim Heo, et al.
Nucleic Acids Research|May 14, 2015
GalaxyPepDock: a protein-peptide docking tool based on interaction similarity and energy optimizationHasup Lee, Lim Heo, Myeong Sup Lee, et al.
Biochimica Et Biophysica Acta|January 15, 2016
Molecular dynamics simulations of biological membranes and membrane proteins using enhanced conformational sampling algorithmsTakaharu Mori, Naoyuki Miyashita, Wonpil Im, et al.
The Journal of Physical Chemistry. B|March 21, 2012
Conformational sampling of peptides in the presence of protein crowders from AA/CG-multiscale simulationsAlexander V Predeus, Seref Gul, Srinivasa M Gopal, et al.
Proteins|December 8, 2009
PRIMO/PRIMONA: a coarse-grained model for proteins and nucleic acids that preserves near-atomistic accuracySrinivasa M Gopal, Shayantani Mukherjee, Yi-Ming Cheng, et al.
Journal of the American Chemical Society|February 14, 2013
Reduced native state stability in crowded cellular environment due to protein-protein interactionsRyuhei Harada, Naoya Tochio, Takanori Kigawa, et al.
Proceedings of the National Academy of Sciences of the United States of America|November 29, 2017
Interaction of intramembrane metalloprotease SpoIVFB with substrate Pro-σKSabyasachi Halder, Daniel Parrell, Douglas Whitten, et al.
Biophysical Journal|August 13, 2013
Energetic and structural details of the trigger-loop closing transition in RNA polymerase IIBeibei Wang, Alexander V Predeus, Zachary F Burton, et al.
Nucleic Acids Research|October 1, 2015
DnaC traps DnaB as an open ring and remodels the domain that binds primaseSundari Chodavarapu, A Daniel Jones, Michael Feig, et al.
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