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Communications in Information and Systems|April 19, 2021
Scoring Functions for Protein-RNA Complex Structure Prediction: Advances, Applications, and Future DirectionsLiming Qiu, Xiaoqin ZouCurrent Opinion in Structural Biology|August 15, 2025
Advances in Protein-RNA aptamer recognition and modeling: Current trends and future perspectivesLiming Qiu, Xiaoqin ZouMethods in Molecular Biology (Clifton, N.J.)|December 19, 2022
Computational Modeling of IN-CTD/TAR Complex to Elucidate Additional Strategies to Inhibit HIV-1 ReplicationLiming Qiu, Savita Bhutoria, Ganjam V Kalpana, et al.Proteins|February 4, 2025
Performance of Hybrid Strategies Combining MDockPP and AlphaFold2 in CAPRI Rounds 47-55Rui Duan, Xianjin Xu, Liming Qiu, et al.Proteins|November 2, 2016
Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactionsXianjin Xu, Liming Qiu, Chengfei Yan, et al.The Journal of General Physiology|June 6, 2019
Identifying the molecular target sites for CFTR potentiators GLPG1837 and VX-770Han-I Yeh, Liming Qiu, Yoshiro Sohma, et al.Proteins|June 3, 2020
Performance of human and server prediction in CAPRI rounds 38-45Rui Duan, Liming Qiu, Xianjin Xu, et al.Journal of Computational Chemistry|December 4, 2019
PepPro: A Nonredundant Structure Data Set for Benchmarking Peptide-Protein Computational DockingXianjin Xu, Xiaoqin ZouMethods in Molecular Biology (Clifton, N.J.)|March 24, 2021
MDock: A Suite for Molecular Inverse Docking and Target PredictionZhiwei Ma, Xiaoqin ZouInternational Journal of Molecular Sciences|November 27, 2021
Dissimilar Ligands Bind in a Similar Fashion: A Guide to Ligand Binding-Mode Prediction with Application to CELPP StudiesXianjin Xu, Xiaoqin ZouPageof 21