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Current Protocols in Protein Science|December 15, 2020
De Novo Protein Design Using the Blueprint Builder in RosettaLinna An, Gyu Rie LeeNature Methods|March 29, 2025
Atomic context-conditioned protein sequence design using LigandMPNNJustas Dauparas, Gyu Rie Lee, Robert Pecoraro, et al.Nucleic Acids Research|May 1, 2016
Galaxy7TM: flexible GPCR-ligand docking by structure refinementGyu Rie Lee, Chaok SeokProteins|July 15, 2015
Effective protein model structure refinement by loop modeling and overall relaxationGyu Rie Lee, Lim Heo, Chaok SeokProteins|October 19, 2017
Simultaneous refinement of inaccurate local regions and overall structure in the CASP12 protein model refinement experimentGyu Rie Lee, Lim Heo, Chaok SeokProceedings of the National Academy of Sciences of the United States of America|November 4, 2025
Modeling protein-small molecule conformational ensembles with PLACERIvan Anishchenko, Yakov Kipnis, Indrek Kalvet, et al.Biorxiv : the Preprint Server for Biology|October 10, 2024
Modeling protein-small molecule conformational ensembles with ChemNetIvan Anishchenko, Yakov Kipnis, Indrek Kalvet, et al.Journal of Chemical Information and Modeling|November 20, 2015
Evaluation of GalaxyDock Based on the Community Structure-Activity Resource 2013 and 2014 Benchmark StudiesWoong-Hee Shin, Gyu Rie Lee, Chaok SeokNucleic Acids Research|April 20, 2019
GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structureGyu Rie Lee, Jonghun Won, Lim Heo, et al.Plos One|November 25, 2014
Protein loop modeling using a new hybrid energy function and its application to modeling in inaccurate structural environmentsHahnbeom Park, Gyu Rie Lee, Lim Heo, et al.Pageof 6