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BMC Bioinformatics|June 5, 2023
Detecting gene breakpoints in noisy genome sequences using position-annotated colored de-Bruijn graphsLisa Fiedler, Matthias Bernt, Martin Middendorf, et al.Bioinformatics Advances|May 27, 2024
DeGeCI 1.1: a web platform for gene annotation of mitochondrial genomesLisa Fiedler, Matthias Bernt, Martin MiddendorfFrontiers in Genetics|August 28, 2023
Fully automated annotation of mitochondrial genomes using a cluster-based approach with de Bruijn graphsLisa Fiedler, Martin Middendorf, Matthias BerntMolecular Phylogenetics and Evolution|October 2, 2012
Bioinformatics methods for the comparative analysis of metazoan mitochondrial genome sequencesMatthias Bernt, Anke Braband, Martin Middendorf, et al.BMC Bioinformatics|December 14, 2011
A method for computing an inventory of metazoan mitochondrial gene order rearrangementsMatthias Bernt, Martin MiddendorfNucleic Acids Research|December 6, 2011
Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangementsFrank Jühling, Joern Pütz, Matthias Bernt, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|October 20, 2006
Genome rearrangement based on reversals that preserve conserved intervalsMatthias Bernt, Daniel Merkle, Martin MiddendorfIEEE/ACM Transactions on Computational Biology and Bioinformatics|August 2, 2008
Solving the preserving reversal median problemMatthias Bernt, Daniel Merkle, Martin MiddendorfMethods in Molecular Biology (Clifton, N.J.)|December 27, 2017
Genome Rearrangement Analysis: Cut and Join Genome Rearrangements and Gene Cluster Preserving ApproachesTom Hartmann, Martin Middendorf, Matthias BerntIEEE/ACM Transactions on Computational Biology and Bioinformatics|July 12, 2018
An Exact Algorithm for Sorting by Weighted Preserving Genome RearrangementsTom Hartmann, Matthias Bernt, Martin MiddendorfPageof 51