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BMC Bioinformatics|February 24, 2011
A clique-based method for the edit distance between unordered trees and its application to analysis of glycan structuresDaiji Fukagawa, Takeyuki Tamura, Atsuhiro Takasu, et al.Journal of Bioinformatics and Computational Biology|December 31, 2013
Breadth-first search approach to enumeration of tree-like chemical compoundsYang Zhao, Morihiro Hayashida, Jira Jindalertudomdee, et al.Bioinformatics (Oxford, England)|April 28, 2007
An approximation method for solving the steady-state probability distribution of probabilistic Boolean networksWai-Ki Ching, Shuqin Zhang, Michael K Ng, et al.Genome Informatics. International Conference on Genome Informatics|March 19, 2010
Analysis and prediction of nutritional requirements using structural properties of metabolic networks and support vector machinesTakeyuki Tamura, Nils Christian, Kazuhiro Takemoto, et al.Journal of Bioinformatics and Computational Biology|March 8, 2005
Protein side-chain packing problem: a maximum edge-weight clique algorithmic approachK C Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, et al.Journal of Theoretical Biology|October 31, 2006
Control of Boolean networks: hardness results and algorithms for tree structured networksTatsuya Akutsu, Morihiro Hayashida, Wai-Ki Ching, et al.Bioinformatics (Oxford, England)|June 21, 2011
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programmingKengo Sato, Yuki Kato, Michiaki Hamada, et al.Scientific Reports|January 8, 2022
A novel graph convolutional neural network for predicting interaction sites on protein kinase inhibitors in phosphorylationFeiqi Wang, Yun-Ti Chen, Jinn-Moon Yang, et al.Plos Computational Biology|January 14, 2022
Identification of periodic attractors in Boolean networks using a priori informationUlrike Münzner, Tomoya Mori, Marcus Krantz, et al.NPJ Systems Biology and Applications|August 12, 2024
A practically efficient algorithm for identifying critical control proteins in directed probabilistic biological networksYusuke Tokuhara, Tatsuya Akutsu, Jean-Marc Schwartz, et al.Pageof 26