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Genome Informatics. International Conference on Genome Informatics|October 23, 2003
Point matching under non-uniform distortions and protein side chain packing based on an efficient maximum clique algorithmBahadur K C Dukka, Tatsuya Akutsu, Etsuji Tomita, et al.Plos One|November 21, 2012
An integrative computational framework based on a two-step random forest algorithm improves prediction of zinc-binding sites in proteinsCheng Zheng, Mingjun Wang, Kazuhiro Takemoto, et al.Frontiers in Genetics|February 11, 2020
Causalcall: Nanopore Basecalling Using a Temporal Convolutional NetworkJingwen Zeng, Hongmin Cai, Hong Peng, et al.Journal of Bioinformatics and Computational Biology|March 29, 2006
Protein threading with profiles and distance constraints using clique based algorithmsBahadur K C Dukka, Etsuji Tomita, Jun'ichi Suzuki, et al.Briefings in Bioinformatics|November 23, 2020
Computational identification of eukaryotic promoters based on cascaded deep capsule neural networksYan Zhu, Fuyi Li, Dongxu Xiang, et al.EURASIP Journal on Bioinformatics & Systems Biology|September 17, 2008
Algorithms and complexity analyses for control of singleton attractors in Boolean networksMorihiro Hayashida, Takeyuki Tamura, Tatsuya Akutsu, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|October 13, 2012
A clique-based method using dynamic programming for computing edit distance between unordered treesTomoya Mori, Takeyuki Tamura, Daiji Fukagawa, et al.Journal of Chemical Information and Modeling|July 28, 2005
Graph kernels for molecular structure-activity relationship analysis with support vector machinesPierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, et al.Briefings in Bioinformatics|November 12, 2019
Network control principles for identifying personalized driver genes in cancerWei-Feng Guo, Shao-Wu Zhang, Tao Zeng, et al.Bioinformatics (Oxford, England)|September 9, 2010
RactIP: fast and accurate prediction of RNA-RNA interaction using integer programmingYuki Kato, Kengo Sato, Michiaki Hamada, et al.Pageof 26