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BMC Medical Genomics|June 6, 2015
Parallelization of enumerating tree-like chemical compounds by breadth-first search orderMorihiro Hayashida, Jira Jindalertudomdee, Yang Zhao, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 17, 2015
Computing smallest intervention strategies for multiple metabolic networks in a boolean modelWei Lu, Takeyuki Tamura, Jiangning Song, et al.Plos One|June 19, 2013
Prediction of heterodimeric protein complexes from weighted protein-protein interaction networks using novel features and kernel functionsPeiying Ruan, Morihiro Hayashida, Osamu Maruyama, et al.Plos One|March 22, 2014
Integer programming-based method for designing synthetic metabolic networks by Minimum Reaction Insertion in a Boolean modelWei Lu, Takeyuki Tamura, Jiangning Song, et al.BMC Systems Biology|June 22, 2011
Conditional random field approach to prediction of protein-protein interactions using domain informationMorihiro Hayashida, Mayumi Kamada, Jiangning Song, et al.Genome Informatics. International Conference on Genome Informatics|May 9, 2009
Improved algorithms for enumerating tree-like chemical graphs with given path frequencyYusuke Ishida, Liang Zhao, Hiroshi Nagamochi, et al.BMC Systems Biology|February 26, 2014
Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lassoMorihiro Hayashida, Mayumi Kamada, Jiangning Song, et al.Bioinformatics (Oxford, England)|October 29, 2004
Fast and accurate database homology search using upper bounds of local alignment scoresMasumi Itoh, Susumu Goto, Tatsuya Akutsu, et al.BMC Bioinformatics|March 3, 2016
Enumeration method for tree-like chemical compounds with benzene rings and naphthalene rings by breadth-first search orderJira Jindalertudomdee, Morihiro Hayashida, Yang Zhao, et al.Nucleic Acids Research|May 19, 2012
Rtips: fast and accurate tools for RNA 2D structure prediction using integer programmingYuki Kato, Kengo Sato, Kiyoshi Asai, et al.Pageof 26