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Biophysical Journal|January 8, 2008
Development of a physics-based force field for the scoring and refinement of protein modelsLiliana Wroblewska, Anna Jagielska, Jeffrey SkolnickScientific Reports|December 3, 2022
PHEVIR: an artificial intelligence algorithm that predicts the molecular role of pathogens in complex human diseasesHongyi Zhou, Courtney Astore, Jeffrey SkolnickBMC Biology|May 10, 2007
Ab initio modeling of small proteins by iterative TASSER simulationsSitao Wu, Jeffrey Skolnick, Yang ZhangScientific Reports|March 21, 2025
A mode of action protein based approach that characterizes the relationships among most major diseasesHongyi Zhou, Brice Edelman, Jeffrey SkolnickJournal of Chemical Information and Modeling|March 3, 2026
GlueFinder: A Data-Driven Framework for the Rational Discovery of Molecular GluesJeffrey Skolnick, Bharath Srinivasan, Hongyi ZhouIsrael Journal of Chemistry|December 9, 2014
On the role of physics and evolution in dictating protein structure and functionJeffrey Skolnick, Mu Gao, Hongyi ZhouPlos One|March 17, 2016
ENTPRISE: An Algorithm for Predicting Human Disease-Associated Amino Acid Substitutions from Sequence Entropy and Predicted Protein StructuresHongyi Zhou, Mu Gao, Jeffrey SkolnickScientific Reports|June 10, 2015
Comprehensive prediction of drug-protein interactions and side effects for the human proteomeHongyi Zhou, Mu Gao, Jeffrey SkolnickThe Journal of Physical Chemistry. B|January 26, 2012
Further evidence for the likely completeness of the library of solved single domain protein structuresJeffrey Skolnick, Hongyi Zhou, Michal BrylinskiProteins|July 2, 2004
Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithmJeffrey Skolnick, Daisuke Kihara, Yang ZhangPageof 270