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Communications Biology|December 20, 2018
The crystal structure of a tetrahydrofolate-bound dihydrofolate reductase reveals the origin of slow product releaseHongnan Cao, Mu Gao, Hongyi Zhou, et al.Nature Communications|November 15, 2022
Prediction of inter-chain distance maps of protein complexes with 2D attention-based deep neural networksZhiye Guo, Jian Liu, Jeffrey Skolnick, et al.Bioorganic & Medicinal Chemistry|August 28, 2016
Novel small molecule binders of human N-glycanase 1, a key player in the endoplasmic reticulum associated degradation pathwayBharath Srinivasan, Hongyi Zhou, Sreyoshi Mitra, et al.Journal of Chemical Information and Modeling|September 29, 2021
AlphaFold 2: Why It Works and Its Implications for Understanding the Relationships of Protein Sequence, Structure, and FunctionJeffrey Skolnick, Mu Gao, Hongyi Zhou, et al.Journal of Cheminformatics|June 18, 2014
Experimental validation of FINDSITE(comb) virtual ligand screening results for eight proteins yields novel nanomolar and micromolar bindersBharath Srinivasan, Hongyi Zhou, Julia Kubanek, et al.The Journal of Chemical Physics|August 18, 2012
Krylov subspace methods for computing hydrodynamic interactions in brownian dynamics simulationsTadashi Ando, Edmond Chow, Yousef Saad, et al.Journal of Structural Biology|September 21, 2010
The utility of geometrical and chemical restraint information extracted from predicted ligand-binding sites in protein structure refinementMichal Brylinski, Seung Yup Lee, Hongyi Zhou, et al.Plos Computational Biology|March 22, 2013
Restricted N-glycan conformational space in the PDB and its implication in glycan structure modelingSunhwan Jo, Hui Sun Lee, Jeffrey Skolnick, et al.Physical Biology|October 6, 2005
Prediction of physical protein-protein interactionsAndrás Szilágyi, Vera Grimm, Adrián K Arakaki, et al.Communications Biology|August 25, 2022
LeMeDISCO is a computational method for large-scale prediction & molecular interpretation of disease comorbidityCourtney Astore, Hongyi Zhou, Bartosz Ilkowski, et al.Pageof 270