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Proteins|October 3, 2007
A knowledge-based forcefield for protein-protein interface designLouis A Clark, Herman W T van VlijmenJournal of Immunology (Baltimore, Md. : 1950)|June 21, 2006
Trends in antibody sequence changes during the somatic hypermutation processLouis A Clark, Skanth Ganesan, Sarah Papp, et al.Journal of Molecular Biology|June 1, 2005
Normal mode calculations of icosahedral viruses with full dihedral flexibility by use of molecular symmetryHerman W T van Vlijmen, Martin KarplusJournal of Structural Biology|September 3, 2013
Influence of canonical structure determining residues on antibody affinity and stabilityLouis A Clark, Stephen J Demarest, John Eldredge, et al.Protein Science : a Publication of the Protein Society|July 27, 2004
A classification of disulfide patterns and its relationship to protein structure and functionAbhas Gupta, Herman W T Van Vlijmen, Juswinder SinghProtein Engineering, Design & Selection : PEDS|December 17, 2008
An antibody loop replacement design feasibility study and a loop-swapped dimer structureLouis A Clark, P Ann Boriack-Sjodin, Eric Day, et al.Journal of Molecular Biology|December 31, 2003
A novel database of disulfide patterns and its application to the discovery of distantly related homologsHerman W T van Vlijmen, Abhas Gupta, Lakshmi S Narasimhan, et al.Journal of Cheminformatics|January 12, 2021
Quantitative prediction of selectivity between the A1 and A2A adenosine receptorsLindsey Burggraaff, Herman W T van Vlijmen, Adriaan P IJzerman, et al.Journal of Chemical Information and Modeling|May 20, 2014
Selecting an optimal number of binding site waters to improve virtual screening enrichments against the adenosine A2A receptorEelke B Lenselink, Thijs Beuming, Woody Sherman, et al.Journal of Chemical Information and Modeling|January 18, 2022
Divide and Conquer. Pocket-Opening Mixed-Solvent Simulations in the Perspective of Docking Virtual Screening Applications for Drug DiscoveryFrancesc Sabanés Zariquiey, Edgar Jacoby, Ann Vos, et al.Pageof 5