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Plos Computational Biology|November 11, 2024
EpiFusion: Joint inference of the effective reproduction number by integrating phylodynamic and epidemiological modelling with particle filteringCiara Judge, Timothy Vaughan, Timothy Russell, et al.
Plos One|January 6, 2018
The genomes of Crithidia bombi and C. expoeki, common parasites of bumblebeesPaul Schmid-Hempel, Markus Aebi, Seth Barribeau, et al.
Nature Microbiology|January 30, 2021
Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiologyAndrew Rambaut, Edward C Holmes, Áine O'Toole, et al.
Nature Microbiology|July 17, 2020
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiologyAndrew Rambaut, Edward C Holmes, Áine O'Toole, et al.
Nature|January 24, 2024
Redefining the treponemal history through pre-Columbian genomes from BrazilKerttu Majander, Marta Pla-Díaz, Louis du Plessis, et al.
Nature Communications|January 8, 2025
Disruption of seasonal influenza circulation and evolution during the 2009 H1N1 and COVID-19 pandemics in Southeastern AsiaZhiyuan Chen, Joseph L-H Tsui, Jun Cai, et al.
AIDS Research and Human Retroviruses|November 16, 2018
The Changing Epidemiological Profile of HIV-1 Subtype B Epidemic in UkraineTetyana I Vasylyeva, Mariia Liulchuk, Louis du Plessis, et al.
Epidemics|February 26, 2026
Transmission lineage dynamics and the detection of viral importation in emerging epidemicsJoseph L-H Tsui, Prathyush Sambaturu, Rosario Evans Pena, et al.
Epidemics|March 25, 2026
Characterizing co-circulating respiratory virus genomic diversity in Switzerland with hybrid-capture sequencing and phylogenetic reconstructions: Insights into the 2023/24 seasonCharlyne Bürki, Matteo Carrara, Lea Fahrni, et al.
The Lancet. Microbe|June 11, 2026
Wastewater-based sequencing of respiratory syncytial virus to investigate lineage dynamics and antigenic site mutations: a retrospective genomic epidemiology studyJolinda de Korne-Elenbaas, Auguste Rimaite, Ivan Topolsky, et al.
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