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Proteins|December 20, 2011
A divide-and-conquer approach to determine the Pareto frontier for optimization of protein engineering experimentsLu He, Alan M Friedman, Chris Bailey-KelloggBMC Bioinformatics|April 28, 2012
Algorithms for optimizing cross-overs in DNA shufflingLu He, Alan M Friedman, Chris Bailey-KelloggComputational Systems Bioinformatics. Computational Systems Bioinformatics Conference|August 1, 2009
Optimizing Bayes error for protein structure model selection by stability mutagenesisXiaoduan Ye, Alan M Friedman, Chris Bailey-KelloggJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 4, 2009
Algorithms for joint optimization of stability and diversity in planning combinatorial libraries of chimeric proteinsWei Zheng, Alan M Friedman, Chris Bailey-KelloggJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 19, 2007
Hypergraph model of multi-residue interactions in proteins: sequentially-constrained partitioning algorithms for optimization of site-directed protein recombinationXiaoduan Ye, Alan M Friedman, Chris Bailey-KelloggBMC Bioinformatics|December 16, 2011
Planning combinatorial disulfide cross-links for protein fold determinationFei Xiong, Alan M Friedman, Chris Bailey-KelloggComputational Systems Bioinformatics. Computational Systems Bioinformatics Conference|October 24, 2007
Algorithms for selecting breakpoint locations to optimize diversity in protein engineering by site-directed protein recombinationWei Zheng, Xiaoduan Ye, Alan M Friedman, et al.Journal of Applied Crystallography|April 19, 2013
Bayesian reconstruction of P(r) directly from two-dimensional detector images via a Markov chain Monte Carlo methodSudeshna Paul, Alan M Friedman, Chris Bailey-Kellogg, et al.Proteins|June 20, 2006
Site-directed combinatorial construction of chimaeric genes: general method for optimizing assembly of gene fragmentsLiz Saftalov, Peter A Smith, Alan M Friedman, et al.Journal of Combinatorial Chemistry|December 13, 2007
Robotic hierarchical mixing for the production of combinatorial libraries of proteins and small moleculesLarisa V Avramova, Jairav Desai, Shelley Weaver, et al.Pageof 74