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Iscience|July 8, 2021
Dynamic partitioning of search patterns for approximate pattern matching using search schemesLuca Renders, Kathleen Marchal, Jan FostierBMC Bioinformatics|October 26, 2023
Pan-genome de Bruijn graph using the bidirectional FM-indexLore Depuydt, Luca Renders, Thomas Abeel, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|September 30, 2024
Lossless Approximate Pattern Matching: Automated Design of Efficient Search SchemesLuca Renders, Lore Depuydt, Sven Rahmann, et al.Bioinformatics (Oxford, England)|December 5, 2025
Columba: fast approximate pattern matching with optimized search schemesLuca Renders, Lore Depuydt, Travis Gagie, et al.DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes|July 29, 2022
BLSSpeller to discover novel regulatory motifs in maizeRazgar Seyed Rahmani, Dries Decap, Jan Fostier, et al.Bioinformatics (Oxford, England)|April 19, 2013
EPSILON: an eQTL prioritization framework using similarity measures derived from local networksLieven P C Verbeke, Lore Cloots, Piet Demeester, et al.Research Square|November 28, 2024
b-move: Faster Lossless Approximate Pattern Matching in a Run-Length Compressed IndexLore Depuydt, Luca Renders, Simon Van de Vyver, et al.Biorxiv : the Preprint Server for Biology|June 10, 2024
b-move: faster bidirectional character extensions in a run-length compressed indexLore Depuydt, Luca Renders, Simon Van de Vyver, et al.Algorithms for Molecular Biology : AMB|August 12, 2025
b-move: faster lossless approximate pattern matching in a run-length compressed indexLore Depuydt, Luca Renders, Simon Van de Vyver, et al.Bioinformatics (Oxford, England)|February 12, 2025
ELLIPSIS: robust quantification of splicing in scRNA-seqMarie Van Hecke, Niko Beerenwinkel, Thibault Lootens, et al.Pageof 23