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Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics|January 15, 2011
Looping probabilities of elastic chains: a path integral approachLudovica Cotta-Ramusino, John H MaddocksNucleic Acids Research|June 16, 2018
cgDNAweb: a web interface to the cgDNA sequence-dependent coarse-grain model of double-stranded DNALennart De Bruin, John H MaddocksStructure (London, England : 1993)|October 10, 2006
Kinking occurs during molecular dynamics simulations of small DNA minicirclesFilip Lankas, Richard Lavery, John H MaddocksProceedings of the National Academy of Sciences of the United States of America|June 14, 2006
HelicesNadia Chouaieb, Alain Goriely, John H MaddocksNucleic Acids Research|February 10, 2015
Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamicsMarco Pasi, John H Maddocks, Richard LaveryPhysical Review Letters|August 29, 2014
Twist and stretch of helices explained via the Kirchhoff-Love rod model of elastic filamentsBojan Ðuričković, Alain Goriely, John H MaddocksNucleic Acids Research|February 10, 2017
Analyzing DNA curvature and its impact on the ionic environment: application to molecular dynamics simulations of minicirclesMarco Pasi, Krystyna Zakrzewska, John H Maddocks, et al.Biopolymers|October 1, 2003
Link, twist, energy, and the stability of DNA minicirclesKathleen A Hoffman, Robert S Manning, John H MaddocksNucleic Acids Research|June 8, 2014
Analyzing ion distributions around DNARichard Lavery, John H Maddocks, Marco Pasi, et al.Journal of Molecular Biology|June 25, 2023
cgNA+web : A Visual Interface to the cgNA+ Sequence-dependent Statistical Mechanics Model of Double-stranded Nucleic AcidsRahul Sharma, Alessandro S Patelli, Lennart De Bruin, et al.Pageof 3