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Plos Computational Biology|February 3, 2026
BiCLUM: Bilateral contrastive learning for unpaired single-cell multi-omics integrationYin Guo, Izaskun Mallona, Mark D Robinson, et al.Nature Communications|July 10, 2023
nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processesLukas M Weber, Arkajyoti Saha, Abhirup Datta, et al.BMC Bioinformatics|November 15, 2002
FunSpec: a web-based cluster interpreter for yeastMark D Robinson, Jörg Grigull, Naveed Mohammad, et al.Current Opinion in Microbiology|November 24, 2004
Transcriptional networks: reverse-engineering gene regulation on a global scaleGordon Chua, Mark D Robinson, Quaid Morris, et al.Current Opinion in Microbiology|September 29, 2004
The promise of functional genomics: completing the encyclopedia of a cellTimothy R Hughes, Mark D Robinson, Nicholas Mitsakakis, et al.Nucleic Acids Research|September 27, 2025
On metrics for subpopulation detection in single-cell and spatial omics dataSiyuan Luo, Pierre-Luc Germain, Ferdinand von Meyenn, et al.Genome Biology|August 9, 2017
stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usageKoen Van den Berge, Charlotte Soneson, Mark D Robinson, et al.Genome Biology|August 16, 2024
Benchmarking computational methods for single-cell chromatin data analysisSiyuan Luo, Pierre-Luc Germain, Mark D Robinson, et al.Journal of Proteome Research|December 15, 2004
Definition and characterization of a "trypsinosome" from specific peptide characteristics by nano-HPLC-MS/MS and in silico analysis of complex protein mixturesThierry Le Bihan, Mark D Robinson, Ian I Stewart, et al.Communications Biology|March 31, 2026
MIMIC: a flexible pipeline to register and summarize IMC-MSI experimentsReto Gerber, Jake Griner, Silvia Guglietta, et al.Pageof 20