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Journal of Chemical Theory and Computation|December 3, 2015
Sequence-Dependent Effects in the Cyclization of Short DNALuke Czapla, David Swigon, Wilma K OlsonJournal of Molecular Biology|July 1, 2008
Effects of the nucleoid protein HU on the structure, flexibility, and ring-closure properties of DNA deduced from Monte Carlo simulationsLuke Czapla, David Swigon, Wilma K OlsonPlos One|March 5, 2013
Interplay of protein and DNA structure revealed in simulations of the lac operonLuke Czapla, Michael A Grosner, David Swigon, et al.Biochemical Society Transactions|March 22, 2013
Structural insights into the role of architectural proteins in DNA looping deduced from computer simulationsWilma K Olson, Michael A Grosner, Luke Czapla, et al.Proceedings of the National Academy of Sciences of the United States of America|November 12, 2014
DNA topology confers sequence specificity to nonspecific architectural proteinsJuan Wei, Luke Czapla, Michael A Grosner, et al.International Journal of Non-Linear Mechanics|July 23, 2013
Mesoscale modeling of multi-protein-DNA assemblies: the role of the catabolic activator protein in Lac-repressor-mediated loopingDavid Swigon, Wilma K OlsonBiophysical Reviews|August 5, 2024
DNA simulation benchmarks revealed with the accumulation of high-resolution structuresWilma K Olson, Robert T Young, Luke CzaplaPhilosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences|August 13, 2004
Implications of the dependence of the elastic properties of DNA on nucleotide sequenceWilma K Olson, David Swigon, Bernard D ColemanProceedings of the National Academy of Sciences of the United States of America|June 21, 2006
Modeling the Lac repressor-operator assembly: the influence of DNA looping on Lac repressor conformationDavid Swigon, Bernard D Coleman, Wilma K OlsonPhysical Chemistry Chemical Physics : PCCP|February 2, 2010
How stiff is DNA?Guohui Zheng, Luke Czapla, A R Srinivasan, et al.Pageof 12