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Lydia Freddolino

Showing results (21-30 of 87) with videos related to

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Nature Protocols|July 3, 2025
A graphic and command line protocol for quick and accurate comparisons of protein and nucleic acid structures with US-alignChengxin Zhang, Lydia Freddolino, Yang Zhang
Genomics, Proteomics & Bioinformatics|April 6, 2026
StarFunc: Fusing Template-based and Deep Learning Approaches for Accurate Protein Function PredictionChengxin Zhang, Quancheng Liu, Lydia Freddolino
Journal of Bacteriology|July 25, 2022
Escherichia coli YigI is a Conserved Gammaproteobacterial Acyl-CoA Thioesterase Permitting Metabolism of Unusual Fatty Acid SubstratesMichael Schmidt, Theresa Proctor, Rucheng Diao, et al.
Biorxiv : the Preprint Server for Biology|January 20, 2025
DNA methylation affects gene expression but not global chromatin structure in <i>Escherichia coli</i>Willow Jay Morgan, Haley M Amemiya, Lydia Freddolino
Nucleic Acids Research|September 22, 2022
Genetic context effects can override canonical cis regulatory elements in Escherichia coliScott A Scholz, Chase D Lindeboom, Lydia Freddolino
Biorxiv : the Preprint Server for Biology|February 20, 2025
ShapeME: A tool and web front-end for de novo discovery of structural motifs underpinning protein-DNA interactionsJeremy W Schroeder, Michael B Wolfe, Lydia Freddolino
Nucleic Acids Research|July 31, 2023
BioLiP2: an updated structure database for biologically relevant ligand-protein interactionsChengxin Zhang, Xi Zhang, Lydia Freddolino, et al.
Journal of Bacteriology|July 14, 2025
DNA methylation affects gene expression but not global chromatin structure in <i>Escherichia coli</i>Willow Jay Morgan, Haley M Amemiya, Lydia Freddolino
Nature Methods|February 8, 2022
CR-I-TASSER: assemble protein structures from cryo-EM density maps using deep convolutional neural networksXi Zhang, Biao Zhang, Lydia Freddolino, et al.
Journal of Bacteriology|November 14, 2018
<i>Escherichia coli</i> Lrp Regulates One-Third of the Genome via Direct, Cooperative, and Indirect RoutesGrace M Kroner, Michael B Wolfe, Lydia Freddolino
Pageof 9

Showing results (21-30 of 87) with videos related to

Sort By:
Pageof 9
Nature Protocols|July 3, 2025
A graphic and command line protocol for quick and accurate comparisons of protein and nucleic acid structures with US-alignChengxin Zhang, Lydia Freddolino, Yang Zhang
Genomics, Proteomics & Bioinformatics|April 6, 2026
StarFunc: Fusing Template-based and Deep Learning Approaches for Accurate Protein Function PredictionChengxin Zhang, Quancheng Liu, Lydia Freddolino
Journal of Bacteriology|July 25, 2022
Escherichia coli YigI is a Conserved Gammaproteobacterial Acyl-CoA Thioesterase Permitting Metabolism of Unusual Fatty Acid SubstratesMichael Schmidt, Theresa Proctor, Rucheng Diao, et al.
Biorxiv : the Preprint Server for Biology|January 20, 2025
DNA methylation affects gene expression but not global chromatin structure in <i>Escherichia coli</i>Willow Jay Morgan, Haley M Amemiya, Lydia Freddolino
Nucleic Acids Research|September 22, 2022
Genetic context effects can override canonical cis regulatory elements in Escherichia coliScott A Scholz, Chase D Lindeboom, Lydia Freddolino
Biorxiv : the Preprint Server for Biology|February 20, 2025
ShapeME: A tool and web front-end for de novo discovery of structural motifs underpinning protein-DNA interactionsJeremy W Schroeder, Michael B Wolfe, Lydia Freddolino
Nucleic Acids Research|July 31, 2023
BioLiP2: an updated structure database for biologically relevant ligand-protein interactionsChengxin Zhang, Xi Zhang, Lydia Freddolino, et al.
Journal of Bacteriology|July 14, 2025
DNA methylation affects gene expression but not global chromatin structure in <i>Escherichia coli</i>Willow Jay Morgan, Haley M Amemiya, Lydia Freddolino
Nature Methods|February 8, 2022
CR-I-TASSER: assemble protein structures from cryo-EM density maps using deep convolutional neural networksXi Zhang, Biao Zhang, Lydia Freddolino, et al.
Journal of Bacteriology|November 14, 2018
<i>Escherichia coli</i> Lrp Regulates One-Third of the Genome via Direct, Cooperative, and Indirect RoutesGrace M Kroner, Michael B Wolfe, Lydia Freddolino
Pageof 9