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Proteins|January 6, 2015
BioGPS: navigating biological space to predict polypharmacology, off-targeting, and selectivityLydia Siragusa, Simon Cross, Massimo Baroni, et al.Molecular Informatics|August 4, 2016
BioGPS: The Music for the Chemo- and Bioinformatics WalzerLydia Siragusa, Francesca Spyrakis, Laura Goracci, et al.Journal of Chemical Information and Modeling|November 2, 2022
An Integrated Machine Learning Model To Spot Peptide Binding Pockets in 3D Protein ScreeningDaniela Trisciuzzi, Lydia Siragusa, Massimo Baroni, et al.Chemical Biology & Drug Design|July 20, 2022
ELIOT: A platform to navigate the E3 pocketome and aid the design of new PROTACsTommaso Palomba, Massimo Baroni, Simon Cross, et al.Pharmaceuticals (Basel, Switzerland)|July 30, 2025
Target Mapping in Cancer: Ligandable Protein Pockets on 3D OncoPPI NetworksDaniela Trisciuzzi, Orazio Nicolotti, Gabriele Cruciani, et al.Journal of Chemical Information and Modeling|February 11, 2022
Getting Insights into Structural and Energetic Properties of Reciprocal Peptide-Protein InteractionsDaniela Trisciuzzi, Lydia Siragusa, Massimo Baroni, et al.Journal of Chemical Information and Modeling|June 1, 2021
Automatic Identification of Lansoprazole Degradants under Stress Conditions by LC-HRMS with MassChemSite and WebChembaseStefano Bonciarelli, Jenny Desantis, Laura Goracci, et al.Expert Opinion on Drug Discovery|May 29, 2023
Targeting protein-protein interactions with low molecular weight and short peptide modulators: insights on disease pathways and starting points for drug discoveryDaniela Trisciuzzi, Bruno O Villoutreix, Lydia Siragusa, et al.Biochimica Et Biophysica Acta|April 4, 2015
Challenging AQP4 druggability for NMO-IgG antibody binding using molecular dynamics and molecular interaction fieldsGiuseppe Felice Mangiatordi, Domenico Alberga, Lydia Siragusa, et al.Plos Computational Biology|June 30, 2017
Detecting similar binding pockets to enable systems polypharmacologyMiquel Duran-Frigola, Lydia Siragusa, Eytan Ruppin, et al.Pageof 3