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Arxiv|May 22, 2023
A bifurcation integrates information from many noisy ion channelsIsabella R Graf, Benjamin B MachtaPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|January 15, 2016
Population annealing: Theory and application in spin glassesWenlong Wang, Jonathan Machta, Helmut G KatzgraberPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|August 15, 2015
Comparing Monte Carlo methods for finding ground states of Ising spin glasses: Population annealing, simulated annealing, and parallel temperingWenlong Wang, Jonathan Machta, Helmut G KatzgraberPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|February 28, 2002
Invaded cluster simulations of the XY model in two and three dimensionsI Dukovski, J Machta, L V ChayesPhysical Review Letters|December 11, 2012
Evidence of non-mean-field-like low-temperature behavior in the Edwards-Anderson spin-glass modelB Yucesoy, Helmut G Katzgraber, J MachtaPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|February 16, 2013
Correlations between the dynamics of parallel tempering and the free-energy landscape in spin glassesBurcu Yucesoy, Jonathan Machta, Helmut G KatzgraberNature Communications|April 9, 2015
Emergent long-range synchronization of oscillating ecological populations without external forcing described by Ising universalityAndrew E Noble, Jonathan Machta, Alan HastingsBiorxiv : the Preprint Server for Biology|November 28, 2024
High fitness paths can connect proteins with low sequence overlapPranav Kantroo, Günter P Wagner, Benjamin B MachtaThe Journal of General Physiology|November 21, 2018
Ion channels can be allosterically regulated by membrane domains near a de-mixing critical pointOfer Kimchi, Sarah L Veatch, Benjamin B MachtaArxiv|May 2, 2025
In-Context Learning can distort the relationship between sequence likelihoods and biological fitnessPranav Kantroo, Günter P Wagner, Benjamin B MachtaPageof 7,724